(chroma_env)delta:chroma blyth$ which python
/usr/local/env/chroma_env/bin/python
(chroma_env)delta:chroma blyth$ python setup.py test
running test
running egg_info
writing requirements to Chroma.egg-info/requires.txt
writing Chroma.egg-info/PKG-INFO
writing top-level names to Chroma.egg-info/top_level.txt
writing dependency_links to Chroma.egg-info/dependency_links.txt
reading manifest file 'Chroma.egg-info/SOURCES.txt'
writing manifest file 'Chroma.egg-info/SOURCES.txt'
running build_ext
copying build/lib.macosx-10.9-x86_64-2.7/chroma/generator/_g4chroma.so -> chroma/generator
copying build/lib.macosx-10.9-x86_64-2.7/chroma/generator/mute.so -> chroma/generator
test.linalg_test.testfloat3add ... ok
test.linalg_test.testfloat3sub ... ok
test.linalg_test.testfloat3addequal ... ok
test.linalg_test.testfloat3subequal ... ok
test.linalg_test.testfloat3addfloat ... ok
test.linalg_test.testfloat3addfloatequal ... ok
test.linalg_test.testfloataddfloat3 ... ok
test.linalg_test.testfloat3subfloat ... ok
test.linalg_test.testfloat3subfloatequal ... ok
test.linalg_test.testfloatsubfloat3 ... ok
test.linalg_test.testfloat3mulfloat ... ok
test.linalg_test.testfloat3mulfloatequal ... ok
test.linalg_test.testfloatmulfloat3 ... ok
test.linalg_test.testfloat3divfloat ... ok
test.linalg_test.testfloat3divfloatequal ... ok
test.linalg_test.testfloatdivfloat3 ... ok
test.linalg_test.testdot ... ok
test.linalg_test.testcross ... ok
test.linalg_test.testnorm ... ok
test.linalg_test.testminusfloat3 ... ok
test.matrix_test.test_matrix ... ok
test.rotate_test.test_rotate ... ok
test_get_layer (test.test_bvh.TestBVH) ... ok
test_layer_count (test.test_bvh.TestBVH) ... ok
test_len (test.test_bvh.TestBVH) ... ok
test_area (test.test_bvh.TestBVHLayer) ... ok
test_fixed_array_to_world (test.test_bvh.TestWorldCoords) ... ok
test_fixed_to_world (test.test_bvh.TestWorldCoords) ... ok
test_out_of_range (test.test_bvh.TestWorldCoords) ... ok
test_world_array_to_fixed (test.test_bvh.TestWorldCoords) ... ok
test_world_to_fixed (test.test_bvh.TestWorldCoords) ... ok
test.test_bvh.test_unpack_nodes ... ok
test.test_bvh_simple.test_simple(2,) ... ok
test.test_bvh_simple.test_simple(3,) ... ok
test.test_bvh_simple.test_simple(4,) ... ok
test_exist_bvh (test.test_cache.TestCacheBVH) ... ok
test_list_bvh (test.test_cache.TestCacheBVH) ... ok
test_load_bvh_not_found (test.test_cache.TestCacheBVH) ... ok
test_remove_bvh (test.test_cache.TestCacheBVH) ... ok
test_save_load_new_bvh (test.test_cache.TestCacheBVH) ... ok
test_creation (test.test_cache.TestCacheCreation) ... ok
test_recreation (test.test_cache.TestCacheCreation) ... ok
test_default_geometry (test.test_cache.TestCacheGeometry) ... ok
test_default_geometry_corruption (test.test_cache.TestCacheGeometry) ... ok
test_get_geometry_hash (test.test_cache.TestCacheGeometry) ... ok
test_get_geometry_hash_not_found (test.test_cache.TestCacheGeometry) ... ok
test_list_geometry (test.test_cache.TestCacheGeometry) ... ok
test_load_geometry_not_found (test.test_cache.TestCacheGeometry) ... ok
test_remove_geometry (test.test_cache.TestCacheGeometry) ... ok
test_replace_geometry (test.test_cache.TestCacheGeometry) ... ok
test_save_load_new_geometry (test.test_cache.TestCacheGeometry) ... ok
test_exist_dir (test.test_cache.TestVerifyOrCreateDir) ... ok
test_exist_file (test.test_cache.TestVerifyOrCreateDir) ... ok
test_no_dir (test.test_cache.TestVerifyOrCreateDir) ... ok
testCharge (test.test_detector.TestDetector)
Test PMT charge distribution ... ok
testTime (test.test_detector.TestDetector)
Test PMT time distribution ... FAIL
test_center (test.test_generator_photon.TestG4ParallelGenerator)
Generate Cherenkov light at the center of the world volume ... ok
test_off_center (test.test_generator_photon.TestG4ParallelGenerator)
Generate Cherenkov light at (1 m, 0 m, 0 m) ... ok
test_constant_particle_gun_center (test.test_generator_vertex.TestParticleGun)
Generate electron vertices at the center of the world volume. ... ok
test_off_center (test.test_generator_vertex.TestParticleGun)
Generate electron vertices at (1,0,0) in the world volume. ... ok
test_file_write_and_read (test.test_io.TestRootIO) ... ok
test_parabola_eval (test.test_parabola.Test1D) ... ok
test_solve (test.test_parabola.Test1D) ... ok
test_parabola_eval (test.test_parabola.Test2D) ... ok
test_solve (test.test_parabola.Test2D) ... ok
testGPUPDF (test.test_pdf.TestPDF)
Create a hit count and (q,t) PDF for 10 MeV events in MicroLBNE ... ok
testSimPDF (test.test_pdf.TestPDF) ... ok
testAbort (test.test_propagation.TestPropagation)
Photons that hit a triangle at normal incidence should not abort. ... ok
test_intersection_distance (test.test_ray_intersection.TestRayIntersection) ... SKIP: Ray data file needs to be updated
testAngularDistributionPolarized (test.test_rayleigh.TestRayleigh) ... ok
testBulkReemission (test.test_reemission.TestReemission)
Test bulk reemission ... SKIP: need to implement scipy stats functions here
test_sampling (test.test_sample_cdf.TestSampling)
Verify that the CDF-based sampler on the GPU reproduces a binned ... ok
======================================================================
FAIL: testTime (test.test_detector.TestDetector)
Test PMT time distribution
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/env/chroma_env/src/chroma/test/test_detector.py", line 50, in testTime
self.assertAlmostEqual(hit_times.std(), 1.2, delta=1e-1)
AssertionError: 0.02522058 != 1.2 within 0.1 delta
-------------------- >> begin captured stdout << ---------------------
Merging 24 nodes to 8 parents
Merging 8 nodes to 2 parents
Merging 2 nodes to 1 parent
--------------------- >> end captured stdout << ----------------------
-------------------- >> begin captured logging << --------------------
chroma: INFO: Flattening detector mesh...
chroma: INFO: triangles: 24
chroma: INFO: vertices: 10
chroma: INFO: Building new BVH using recursive grid algorithm.
chroma: INFO: BVH generated in 0.2 seconds.
chroma: INFO: Optimization: Sufficient memory to move triangles onto GPU
chroma: INFO: Optimization: Sufficient memory to move vertices onto GPU
chroma: INFO: device usage:
----------
nodes 35.0 560.0
total 560.0
----------
device total 2.1G
device used 336.0M
device free 1.8G
--------------------- >> end captured logging << ---------------------
----------------------------------------------------------------------
Ran 72 tests in 47.072s
FAILED (failures=1, skipped=2)
/usr/local/env/chroma_env/lib/python2.7/site-packages/pycuda/autoinit.py:16: RuntimeWarning: Parent module 'pycuda' not found while handling absolute import
from pycuda.tools import clear_context_caches
Error in atexit._run_exitfuncs:
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
func(targs, kargs)
File "/usr/local/env/chroma_env/src/root-v5.34.14/lib/ROOT.py", line 593, in cleanup
facade = sys.modules[ __name__ ]
KeyError: 'ROOT'
Error in sys.exitfunc:
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
func(targs, kargs)
File "/usr/local/env/chroma_env/src/root-v5.34.14/lib/ROOT.py", line 593, in cleanup
facade = sys.modules[ __name__ ]
KeyError: 'ROOT'
(chroma_env)delta:chroma blyth$
Adding “import ROOT” into the setup.py avoids the atexit mess:
Error in atexit._run_exitfuncs:
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
func(*targs, **kargs)
File "/usr/local/env/chroma_env/src/root-v5.34.14/lib/ROOT.py", line 593, in cleanup
facade = sys.modules[ __name__ ]
KeyError: 'ROOT'
Error in sys.exitfunc:
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
func(*targs, **kargs)
File "/usr/local/env/chroma_env/src/root-v5.34.14/lib/ROOT.py", line 593, in cleanup
facade = sys.modules[ __name__ ]
KeyError: 'ROOT'
This warning remains:
/usr/local/env/chroma_env/lib/python2.7/site-packages/pycuda/autoinit.py:16: RuntimeWarning: Parent module 'pycuda' not found while handling absolute import
from pycuda.tools import clear_context_caches
(chroma_env)delta:chroma-deps blyth$ cat /usr/local/env/chroma_env/lib/python2.7/site-packages/pycuda/autoinit.py
import pycuda.driver as cuda
# Initialize CUDA
cuda.init()
from pycuda.tools import make_default_context
global context
context = make_default_context()
device = context.get_device()
def _finish_up():
global context
context.pop()
context = None
from pycuda.tools import clear_context_caches
clear_context_caches()
import atexit
atexit.register(_finish_up)
(chroma_env)delta:chroma blyth$ python -c "import pycuda"
(chroma_env)delta:chroma blyth$
(chroma_env)delta:chroma blyth$ python -c "import pycuda.tools"
(chroma_env)delta:chroma blyth$
(chroma_env)delta:chroma blyth$ python -c "from pycuda.tools import clear_context_caches"
(chroma_env)delta:chroma blyth$
======================================================================
FAIL: testTime (test.test_detector.TestDetector)
Test PMT time distribution
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/env/chroma_env/src/chroma/test/test_detector.py", line 50, in testTime
self.assertAlmostEqual(hit_times.std(), 1.2, delta=1e-1)
AssertionError: 0.02522058 != 1.2 within 0.1 delta
-------------------- >> begin captured stdout << ---------------------
Doing this simulation repeatedly with a modified test_detector.py suggests this fail is due to insufficient stats (only 1000 rolls of a single photon) for the 500 or 250 time/charge hit distributions to fall within expected bounds.
Need to check distribution to be sure.
Testing again, from my bitbucket fork:
(chroma_env)delta:chroma blyth$ python setup.py test
running test
running egg_info
writing requirements to Chroma.egg-info/requires.txt
writing Chroma.egg-info/PKG-INFO
writing top-level names to Chroma.egg-info/top_level.txt
writing dependency_links to Chroma.egg-info/dependency_links.txt
reading manifest file 'Chroma.egg-info/SOURCES.txt'
writing manifest file 'Chroma.egg-info/SOURCES.txt'
running build_ext
copying build/lib.macosx-10.9-x86_64-2.7/chroma/generator/_g4chroma.so -> chroma/generator
copying build/lib.macosx-10.9-x86_64-2.7/chroma/generator/mute.so -> chroma/generator
Info in <TUnixSystem::ACLiC>: creating shared library /Users/blyth/.chroma/root_C.so
RooFit v3.59 -- Developed by Wouter Verkerke and David Kirkby
Copyright (C) 2000-2013 NIKHEF, University of California & Stanford University
All rights reserved, please read http://roofit.sourceforge.net/license.txt
test.linalg_test.testfloat3add ... ok
test.linalg_test.testfloat3sub ... ok
test.linalg_test.testfloat3addequal ... ok
test.linalg_test.testfloat3subequal ... ok
test.linalg_test.testfloat3addfloat ... ok
test.linalg_test.testfloat3addfloatequal ... ok
test.linalg_test.testfloataddfloat3 ... ok
test.linalg_test.testfloat3subfloat ... ok
test.linalg_test.testfloat3subfloatequal ... ok
test.linalg_test.testfloatsubfloat3 ... ok
test.linalg_test.testfloat3mulfloat ... ok
test.linalg_test.testfloat3mulfloatequal ... ok
test.linalg_test.testfloatmulfloat3 ... ok
test.linalg_test.testfloat3divfloat ... ok
test.linalg_test.testfloat3divfloatequal ... ok
test.linalg_test.testfloatdivfloat3 ... ok
test.linalg_test.testdot ... ok
test.linalg_test.testcross ... ok
test.linalg_test.testnorm ... ok
test.linalg_test.testminusfloat3 ... ok
test.matrix_test.test_matrix ... ok
test.rotate_test.test_rotate ... ok
test_get_layer (test.test_bvh.TestBVH) ... ok
test_layer_count (test.test_bvh.TestBVH) ... ok
test_len (test.test_bvh.TestBVH) ... ok
test_area (test.test_bvh.TestBVHLayer) ... ok
test_fixed_array_to_world (test.test_bvh.TestWorldCoords) ... ok
test_fixed_to_world (test.test_bvh.TestWorldCoords) ... ok
test_out_of_range (test.test_bvh.TestWorldCoords) ... ok
test_world_array_to_fixed (test.test_bvh.TestWorldCoords) ... ok
test_world_to_fixed (test.test_bvh.TestWorldCoords) ... ok
test.test_bvh.test_unpack_nodes ... ok
test.test_bvh_simple.test_simple(2,) ... ok
test.test_bvh_simple.test_simple(3,) ... ok
test.test_bvh_simple.test_simple(4,) ... ok
test_exist_bvh (test.test_cache.TestCacheBVH) ... ok
test_list_bvh (test.test_cache.TestCacheBVH) ... ok
test_load_bvh_not_found (test.test_cache.TestCacheBVH) ... ok
test_remove_bvh (test.test_cache.TestCacheBVH) ... ok
test_save_load_new_bvh (test.test_cache.TestCacheBVH) ... ok
test_creation (test.test_cache.TestCacheCreation) ... ok
test_recreation (test.test_cache.TestCacheCreation) ... ok
test_default_geometry (test.test_cache.TestCacheGeometry) ... ok
test_default_geometry_corruption (test.test_cache.TestCacheGeometry) ... ok
test_get_geometry_hash (test.test_cache.TestCacheGeometry) ... ok
test_get_geometry_hash_not_found (test.test_cache.TestCacheGeometry) ... ok
test_list_geometry (test.test_cache.TestCacheGeometry) ... ok
test_load_geometry_not_found (test.test_cache.TestCacheGeometry) ... ok
test_remove_geometry (test.test_cache.TestCacheGeometry) ... ok
test_replace_geometry (test.test_cache.TestCacheGeometry) ... ok
test_save_load_new_geometry (test.test_cache.TestCacheGeometry) ... ok
test_exist_dir (test.test_cache.TestVerifyOrCreateDir) ... ok
test_exist_file (test.test_cache.TestVerifyOrCreateDir) ... ok
test_no_dir (test.test_cache.TestVerifyOrCreateDir) ... ok
testCharge (test.test_detector.TestDetector)
Test PMT charge distribution ... ok
testTime (test.test_detector.TestDetector)
Test PMT time distribution ... ok
test_center (test.test_generator_photon.TestG4ParallelGenerator)
Generate Cherenkov light at the center of the world volume ... ok
test_off_center (test.test_generator_photon.TestG4ParallelGenerator)
Generate Cherenkov light at (1 m, 0 m, 0 m) ... ok
test_constant_particle_gun_center (test.test_generator_vertex.TestParticleGun)
Generate electron vertices at the center of the world volume. ... ok
test_off_center (test.test_generator_vertex.TestParticleGun)
Generate electron vertices at (1,0,0) in the world volume. ... ok
test_file_write_and_read (test.test_io.TestRootIO) ... ok
test_parabola_eval (test.test_parabola.Test1D) ... ok
test_solve (test.test_parabola.Test1D) ... ok
test_parabola_eval (test.test_parabola.Test2D) ... ok
test_solve (test.test_parabola.Test2D) ... ok
testGPUPDF (test.test_pdf.TestPDF)
Create a hit count and (q,t) PDF for 10 MeV events in MicroLBNE ... ok
testSimPDF (test.test_pdf.TestPDF) ... ok
testAbort (test.test_propagation.TestPropagation)
Photons that hit a triangle at normal incidence should not abort. ... ok
test_intersection_distance (test.test_ray_intersection.TestRayIntersection) ... SKIP: Ray data file needs to be updated
testAngularDistributionPolarized (test.test_rayleigh.TestRayleigh) ... ok
testBulkReemission (test.test_reemission.TestReemission)
Test bulk reemission ... SKIP: need to implement scipy stats functions here
test_sampling (test.test_sample_cdf.TestSampling)
Verify that the CDF-based sampler on the GPU reproduces a binned ... ok
----------------------------------------------------------------------
Ran 72 tests in 81.926s
OK (skipped=2)
/usr/local/env/chroma_env/lib/python2.7/site-packages/pycuda/autoinit.py:16: RuntimeWarning: Parent module 'pycuda' not found while handling absolute import
from pycuda.tools import clear_context_caches
Error in atexit._run_exitfuncs:
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
func(targs, kargs)
File "/usr/local/env/chroma_env/src/root-v5.34.14/lib/ROOT.py", line 593, in cleanup
facade = sys.modules[ __name__ ]
KeyError: 'ROOT'
Error in sys.exitfunc:
Traceback (most recent call last):
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
func(targs, kargs)
File "/usr/local/env/chroma_env/src/root-v5.34.14/lib/ROOT.py", line 593, in cleanup
facade = sys.modules[ __name__ ]
KeyError: 'ROOT'
(chroma_env)delta:chroma blyth$
(chroma_env)delta:chroma blyth$ nosetests -v
Info in <TUnixSystem::ACLiC>: creating shared library /Users/blyth/.chroma/root_C.so
RooFit v3.59 -- Developed by Wouter Verkerke and David Kirkby
Copyright (C) 2000-2013 NIKHEF, University of California & Stanford University
All rights reserved, please read http://roofit.sourceforge.net/license.txt
test.linalg_test.testfloat3add ... ok
test.linalg_test.testfloat3sub ... ok
test.linalg_test.testfloat3addequal ... ok
test.linalg_test.testfloat3subequal ... ok
test.linalg_test.testfloat3addfloat ... ok
test.linalg_test.testfloat3addfloatequal ... ok
test.linalg_test.testfloataddfloat3 ... ok
test.linalg_test.testfloat3subfloat ... ok
test.linalg_test.testfloat3subfloatequal ... ok
test.linalg_test.testfloatsubfloat3 ... ok
test.linalg_test.testfloat3mulfloat ... ok
test.linalg_test.testfloat3mulfloatequal ... ok
test.linalg_test.testfloatmulfloat3 ... ok
test.linalg_test.testfloat3divfloat ... ok
test.linalg_test.testfloat3divfloatequal ... ok
test.linalg_test.testfloatdivfloat3 ... ok
test.linalg_test.testdot ... ok
test.linalg_test.testcross ... ok
test.linalg_test.testnorm ... ok
test.linalg_test.testminusfloat3 ... ok
test.matrix_test.test_matrix ... ok
test.rotate_test.test_rotate ... ok
test_get_layer (test.test_bvh.TestBVH) ... ok
test_layer_count (test.test_bvh.TestBVH) ... ok
test_len (test.test_bvh.TestBVH) ... ok
test_area (test.test_bvh.TestBVHLayer) ... ok
test_fixed_array_to_world (test.test_bvh.TestWorldCoords) ... ok
test_fixed_to_world (test.test_bvh.TestWorldCoords) ... ok
test_out_of_range (test.test_bvh.TestWorldCoords) ... ok
test_world_array_to_fixed (test.test_bvh.TestWorldCoords) ... ok
test_world_to_fixed (test.test_bvh.TestWorldCoords) ... ok
test.test_bvh.test_unpack_nodes ... ok
test.test_bvh_simple.test_simple(2,) ... ok
test.test_bvh_simple.test_simple(3,) ... ok
test.test_bvh_simple.test_simple(4,) ... ok
test_exist_bvh (test.test_cache.TestCacheBVH) ... ok
test_list_bvh (test.test_cache.TestCacheBVH) ... ok
test_load_bvh_not_found (test.test_cache.TestCacheBVH) ... ok
test_remove_bvh (test.test_cache.TestCacheBVH) ... ok
test_save_load_new_bvh (test.test_cache.TestCacheBVH) ... ok
test_creation (test.test_cache.TestCacheCreation) ... ok
test_recreation (test.test_cache.TestCacheCreation) ... ok
test_default_geometry (test.test_cache.TestCacheGeometry) ... ok
test_default_geometry_corruption (test.test_cache.TestCacheGeometry) ... ok
test_get_geometry_hash (test.test_cache.TestCacheGeometry) ... ok
test_get_geometry_hash_not_found (test.test_cache.TestCacheGeometry) ... ok
test_list_geometry (test.test_cache.TestCacheGeometry) ... ok
test_load_geometry_not_found (test.test_cache.TestCacheGeometry) ... ok
test_remove_geometry (test.test_cache.TestCacheGeometry) ... ok
test_replace_geometry (test.test_cache.TestCacheGeometry) ... ok
test_save_load_new_geometry (test.test_cache.TestCacheGeometry) ... ok
test_exist_dir (test.test_cache.TestVerifyOrCreateDir) ... ok
test_exist_file (test.test_cache.TestVerifyOrCreateDir) ... ok
test_no_dir (test.test_cache.TestVerifyOrCreateDir) ... ok
Test PMT charge distribution ... ok
Test PMT time distribution ... ok
Generate Cherenkov light at the center of the world volume ... ok
Generate Cherenkov light at (1 m, 0 m, 0 m) ... ok
Generate electron vertices at the center of the world volume. ... ok
Generate electron vertices at (1,0,0) in the world volume. ... ok
test_file_write_and_read (test.test_io.TestRootIO) ... ok
test_parabola_eval (test.test_parabola.Test1D) ... ok
test_solve (test.test_parabola.Test1D) ... ok
test_parabola_eval (test.test_parabola.Test2D) ... ok
test_solve (test.test_parabola.Test2D) ... ok
Create a hit count and (q,t) PDF for 10 MeV events in MicroLBNE ... ok
testSimPDF (test.test_pdf.TestPDF) ... ok
Photons that hit a triangle at normal incidence should not abort. ... ok
test_intersection_distance (test.test_ray_intersection.TestRayIntersection) ... SKIP: Ray data file needs to be updated
testAngularDistributionPolarized (test.test_rayleigh.TestRayleigh) ... ok
Test bulk reemission ... SKIP: need to implement scipy stats functions here
Verify that the CDF-based sampler on the GPU reproduces a binned ... ok
----------------------------------------------------------------------
Ran 72 tests in 49.408s
OK (SKIP=2)
(chroma_env)delta:chroma blyth$